Additional file 2: Table S1. of An analytical workflow for accurate variant discovery in highly divergent regions

Five mappers and five variant callers used in the study. Table S2. SNP and INDEL calling precision rate in simulated data. Table S3. Percent of SNP calling sensitivity for three callers in simulated data. Table S4. INDEL calling sensitivity for two callers in simulated data. Table S5. Known INDELs in the HLA region of NA12878. Table S6. Novel INDELs in the HLA region of NA12878. Table S7. Number of novel SNPs in 22 CLL samples. Table S8. Number of INDELs in 22 CLL samples. (PDF 170 kb)