40168_2017_339_MOESM29_ESM.pdf (338.39 kB)
Additional file 29: of Metagenomic characterization of ambulances across the USA
journal contribution
posted on 2017-09-22, 05:00 authored by Niamh O’Hara, Harry Reed, Ebrahim Afshinnekoo, Donell Harvin, Nora Caplan, Gail Rosen, Brook Frye, Stephen Woloszynek, Rachid Ounit, Shawn Levy, Erin Butler, Christopher MasonFigure S12. Volcano plot of the p-value versus log2-fold change (LFC) of HUMAnN2 pathway abundances resulting from a DESeq2 differential abundance analysis for city class with FDR correction (Benjamini-Hochberg correction, α = 0.01). Class combinations were selected based on overlap data classification performance. Points vary in color based on pathway superclass and size based on the proportion of genes in that class with p < α. Genes in the 95th percentile of absolute LFC are labeled. (PDF 338 kb)