Additional file 1 of Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads

Supplementary information. This file contains the following sections: S1 - Details about seeding, alignment steps, and parameter selection. S2 - Contains details and graphs for additional testing and results described in the Results section of the main text. S3 - Version details for the different aligners. S4 - Parameters used for Last training and alignment, and also Last training results. S5 - Where to download and how to use Varhmm software, as well as training results from VarHMM. (PDF 318 kb)