Additional file 1: of Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements

Table S1. Tissue types and the number of normal tissue samples. Table S2. Tissue clustering results based on TE expression. Table S3. TE modules and TE family memberships. Table S4. KZFP members of the intronic TE module. Table S5. Gene correlated with L1HS 5′ transcript level. Table S6. Housekeeping genes. Figure S1. Effect of normalization on TE transcripts. Figure S2. Example cases of correction for intron retention. Figure S3. Comparison of TE family expression between multimapped reads and uniquely mapped reads. Figure S4. Read alignment for TEs with tissue-specific expression. Figure S5. co-expression modules in the weighted gene coexpression network analysis. Figure S6. Transcription factor binding on KZFP genes that are members of the intronic TE module N1. Figure S7. Transcription factor binding on genes correlated with L1HS 5′. Figure S8. past radiation therapy and intronic TE expression. Figure S9. ENCODE candidate regulatory element marks overlapped with TE expression and ZFP binding. (DOCX 8440 kb)