Additional file 1: of The practical use of genome sequencing data in the management of a feline colony pedigree

Additional tables. Table S1. Validation primer sequences and PCR annealing temperatures; Table S2. Heterozygous SNPs selected from SNPchip data for cross validation; Table S3. Variants associated with diseases in cats with a commercial DNA test available; Table S4. LoF variants identified in genes associated with disease; Table S5. Inbreeding coefficient calculated with SNPchip data of only 3 cats and with SNPchip data of 297 cats ; Table S6. RoH identified with SNPchip data on the three cats; Table S7. RoH identified with WGS data on the three cats. The last column has the overlap with SNPchip RoH number. (DOCX 42 kb)