Additional file 1: of Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica

Table S1. Distribution of the orthologous genes identified among all 90 genomes. Table S2. The pan and core genome size of all three serotypes and each serotype. Table S3. Basic information of 90 AMR S. enterica isolates. Table S4. Distribution of the AMR genes identified among all 90 genomes. Table S5. Distribution of the PPG genes identified among all 90 genomes. Table S6. Orthologous genes significantly over- and under- represented in S. Dublin, S. Newport, and S. Typhimurium. Table S7. Distributionof the GO and EC terms identified among all 90 genomes. Table S8. GO terms and EC numbers significantly over- and under- represented in S. Dublin, S. Newport, and S. Typhimurium. Table S9. Prophages and number of corresponding PPG genes significantly over- and under- represented in S. Dublin, S. Newport, and S. Typhimurium. Table S10. MLST sequence type of S. Typhimurium isolates. Table S11. Isolates identified by Gubbins showing recombinant regions. Table S12. Genes undergoing positive selection across all serotypes, within S. Newport and S. Typhimurium detected by site model using PAML. (XLSX 3780 kb)