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Additional file 1: of Microbial community drivers of PK/NRP gene diversity in selected global soils

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posted on 2019-05-22, 05:00 authored by Chiara Borsetto, Gregory Amos, Ulisses Rocha, Alex Mitchell, Robert Finn, Rabah Laidi, Carlos Vallin, David Pearce, Kevin Newsham, Elizabeth Wellington
Table S1. Characteristics and GPS coordinates of soils used in this study. Table S2. Primers and conditions used to prepare the amplicon libraries. Table S3. Summary of sequence counts per samples and total observed OTU processed with the custom pipeline. Table S4. Sequence counts for each sample for all targeted amplicon processed with the custom pipeline. Table S5. Correlation between phyla (16S rRNA gene diversity) and either A or KS domain diversity in all samples. Figure S1. Rarefaction curves for 16S rRNA gene, A and KS domains diversity. Figure S2. Alpha diversity indices for 16S rRNA gene and A and KS domains for each soil sample. Table S6. Correlation between Bray Curtis dissimilarity matrixes of each taxonomic level and the original OTU table. Figure S3. Community composition at phylum level of each soil sample. Figure S4. Representation at the Superkingdom level of the taxonomic providence of A and KS domain sequences. Figure S5. Procrustes transformation superimposition of 16S rRNA gene (all phyla or separate) against A domain diversity. Figure S6. Procrustes transformation superimposition of 16S rRNA gene (all phyla or separate) against KS domain diversity. (PDF 3191 kb)

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Natural Environment Research Council

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