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Additional file 1: of Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut

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posted on 2019-08-28, 04:05 authored by Yoshihiko Suzuki, Suguru Nishijima, Yoshikazu Furuta, Jun Yoshimura, Wataru Suda, Kenshiro Oshima, Masahira Hattori, Shinichi Morishita
Figure S1. Genes in PacBio and short-read contigs. Figure S2. Optimization for identification of phage orthologous groups (POGs). Figure S3. Sequence alignments of two highly homologous but distinct plasmid CCs in three samples. Figure S4. Similarity search of 82 CCs against the public plasmid/phage database. Figure S5. Mapping of PacBio subreads and short reads to the five crAssphage CCs. Figure S6. Dot plot of terminal direct repeats in the five crAssphages. Figure S7. GC skews in the linear crAssphage genomes. Figure S8. Mapping of PacBio subreads to two phage CCs. Figure S9. Phylogenetic tree of 101 high-quality chromosome bins and 181 known genomes. Figure S10. Host prediction by methylation motif similarity between eMGEs and HQ chromosome bins in the PacBio JP dataset. Figure S11. Host-plasmid network. The predicted host-plasmid relationships were summarized and visualized as a network. Figure S12. Ratios of reads mapped to plasmids and crAssphages in 413 metagenomic data sets and proportions of crAssphage-positive individuals. Figure S13. Association analysis of the abundance of crAssphages with subjects’ age, BMI, and sex in the IGCJ dataset. Figure S14. Antibiotic resistance genes in plasmids in the IGCJ dataset. (PDF 6178 kb)

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Japan Science and Technology Agency

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