13059_2020_2029_MOESM1_ESM.docx (2.71 MB)
Additional file 1 of Gapless assembly of maize chromosomes using long-read technologies
journal contribution
posted on 2020-05-21, 03:47 authored by Jianing Liu, Arun S. Seetharam, Kapeel Chougule, Shujun Ou, Kyle W. Swentowsky, Jonathan I. Gent, Victor Llaca, Margaret R. Woodhouse, Nancy Manchanda, Gernot G. Presting, David A. Kudrna, Magdy Alabady, Candice N. Hirsch, Kevin A. Fengler, Doreen Ware, Todd P. Michael, Matthew B. Hufford, R. Kelly DaweAdditional file 1: Figure S1. Workflow for the B73-Ab10 assembly pipeline. Figure S2. Complementation of PacBio assembly gaps by Nanopore contigs. Figure S3. The alignment of BAC-based assemblies of B73 centromeres to the merged assembly in optical map format. Table S1. Assembly statistics and gaps in B73-Ab10 assemblies. Table S2. Accuracy of genome assemblies as assessed by comparison to Bionano maps. Table S3. Coordinates and composition of centromeres defined by CENH3 ChIP-seq in the B73-Ab10 assembly. Table S4. CENH3 enrichment and mappability of Illumina reads in active centromeres. Table S5. Repetitive components in B73-Ab10 assemblies. Table S6. Composition of CentC arrays. Table S7. Composition of knob180 and TR-1 knobs. Table S8. Gene and transposon distributions in the Ab10 haplotype and corresponding N10 regions.
