Additional file 1: of Design and application of a novel two-amplicon approach for defining eukaryotic microbiota

Table S1. Accuracy of taxonomic assignments of 18S and 28S rRNA variable genetic regions. Related to Fig. 1. Table S2. Primer characteristics and TestProbe3.0 results. Related to Fig. 2. Table S3. Amplicon sequencing statistics. Table S4. Read counts for eukaryotic microbes detected by two amplicon methods in patients suffering from SAM. Related to Fig. 3. Table S5. Genome and gene accessions used for comparisons with stool sample DNA and phylogenetic trees. Table S6. Differential abundance analysis of bacteria based on of Blastocystis carriage, using ALDEx2. Related to Fig. 5. Table S7. Association between eukaryote carriage or HIV reactivity and bacterial diversity. Related to Fig. 5. Table S8. Association between eukaryote abundance and clinical characteristics of patients hospitalized for SAM. (XLS 162 kb)