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Additional file 1: Table S1. of High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond

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posted on 19.01.2017 by Xianzhe Gong, Stig Skrivergaard, Benjamin Korsgaard, Lars Schreiber, Ian Marshall, Kai Finster, Andreas Schramm
Results of in silico DNA-DNA hybridization (DDH) of the assembled strain S3-2 draft genome against all published Janthinobacterium genomes using the online genome-to-genome calculator with the GGDC 2.0 BLAST+ model [1]. Displayed values were calculated according to formula 2, the only formula able to confidently predict DDH values of incomplete genomes [1]. The threshold to delineate two distinct species is 70% [1]. Table S2. Whole genome-based average nucleotide identity (ANI) of strain S3-2 to other sequenced Janthinobacterium genomes [2, 3]. The threshold to delineate two distinct species is 95% [3]. Table S3. Locus tags of the vioABCDE operon in other Janthinobacterium genomes in IMG. Table S4. Genomic inventory for denitrification in strain S3-2 based on the annotation from IMG. Table S5. Genomic inventory for terminal oxidases in strain S3-2 based on the annotation from IMG. Table S6. Genes encoding the D-Glucose fermentation pathway in strain S3-2 based on the annotation from IMG. Figure S1. Pathway of D-Glucose fermentation in strain S3-2 based on the annotation from IMG. (1), glucokinase; (2), glucose-6-phosphate isomerase; (3), 6-phosphofructokinase 1; (4), fructose-bisphosphate aldolase; (5), triosephosphate isomerase; (6), glyceraldehyde 3-phosphate dehydrogenase; (7), phosphoglycerate kinase; (8), 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; (9), probable phosphoglycerate mutase; (10), enolase; (11, 12), pyruvate kinase; (13, 14), pyruvate dehydrogenase (quinone); (15, 16), L-lactate dehydrogenase (cytochrome). For gene details, see Table S5. (DOCX 41 kb)

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