Additional file 1: Table S1. of Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing

TASSEL software parameters used for SNP calling and filtering. Table S2. Types of substitutions represented by the identified SNP loci. Table S3. Significant (P < 0.05) correlations between tomato fruit traits. Correlations with P value > 0.05 were considered to be non-significant (NS). FW = Fruit weight, DW = Dry matter weight, EXC = External color, INC = Internal color, LN = Locule number, WALL = Wall thickness, FIRM = Firmness, FS = Fruit shape, SCAR = Stem scar, SSC = Soluble solids content. Table S4. LOD thresholds of 11 fruit quality traits calculated by 1,000 random permutations with parameters (a = 0.05). Table S5. Fruit quality QTLs that colocalized. Figure S1. Frequency distributions for the fruit traits in the IBL population. FW = Fruit weight, DW = Dry matter weight, EXC = External color, INC = Internal color, LN = Locule number, WALL = Wall thickness, FIRM = Firmness, FS = Fruit shape, SCAR = Stem scar, SSC = Soluble solids content. All the traits except external color, locule number and fruit shape showed normal and continuous distribution (DOCX 74 kb)