Additional file 1: Table S1. of Evolutionary fate and implications of retrocopies in the African coelacanth genome

Informations of the retrocopies and their parent genes in the genome of Africa coelacanth. Table S2. Mapping informations about the mapping of retrocopies to Ensembl genes. Table S3. FPKMs of the retrocopies in each tissue. Table S4. Mean and median values of log(FPKM + 1), dS and dN/dS for the retrocopies expressed in different tissues. Table S5. Mean and median values of log(FPKM + 1), dS and dN/dS for the retrocopies uniquely expressed in different tissues. Table S6. The comparison of structure and expression informations between Coelacanth lineage-special retrocopy-overlapped genes and the rest of the retrocopy-overlapped genes. Table S7. Summary of over-represented GO terms for the retrocopy-overlapped genes that are lineage special to coelacanth. Table S8. List of the retrocopy-overlapped genes that specially lost in tetrapod. Table S9. Comparison of structure and expression informations between the retrocopy-overlapped genes that specially lost in tetrapod and those still exist. Table S10. Comparison of over-represented GO terms between the retrocopy-overlapped genes that specially lost in tetrapod and those that still exist in tetrapod. (XLS 485 kb)