Additional file 1: Table S1. of A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data

Primer pairs used in PCR. Figure S1. Circular map of T-DNA construct. Figure S2. PCR confirmation of the junction site in three transgenic rices. Figure S3. Insert size distribution of three transgenic rice plants. Figure S4. Electropherogram of the fragment size of sequencing library using Caliper GX. Figure S5. View of alignments mapped against T-DNA (6.2 kb) using IGV. Figure S6. View of alignments mapped against whole transformation plasmid (~1.3 kb) using IGB. (PDF 1285 kb)