Additional file 1: Figure S1. of ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

Library complexity method exploration. a. PBC score comparison between ChiLin and ENCODE. b. Correlation between 5 and 30 M uniquely mapped reads across different library complexity metrics for ChIP-seq and DNase-seq. c. Linear regresssion F statistics between 5 and 30 M uniquely mapped reads library complexity metrics for ChIP-seq and DNase-seq. d. Three degrees of library complexity quality, each with 10 samples. e. PBC score distribution at different sequence depths through sampling down the uniquely mapped reads, line and point colors indicates different quality level as in d. (TIF 2123 kb)