10.6084/m9.figshare.9565931.v1
Guru Radhakrishnan
Guru
Radhakrishnan
Nicola Cook
Nicola
Cook
Vanessa Bueno-Sancho
Vanessa
Bueno-Sancho
Clare Lewis
Clare
Lewis
Antoine Persoons
Antoine
Persoons
Abel Mitiku
Abel
Mitiku
Matthew Heaton
Matthew
Heaton
Phoebe Davey
Phoebe
Davey
Bekele Abeyo
Bekele
Abeyo
Yoseph Alemayehu
Yoseph
Alemayehu
Ayele Badebo
Ayele
Badebo
Marla Barnett
Marla
Barnett
Ruth Bryant
Ruth
Bryant
Jeron Chatelain
Jeron
Chatelain
Xianming Chen
Xianming
Chen
Suomeng Dong
Suomeng
Dong
Tina Henriksson
Tina
Henriksson
Sarah Holdgate
Sarah
Holdgate
Annemarie Justesen
Annemarie
Justesen
Jay Kalous
Jay
Kalous
Zhensheng Kang
Zhensheng
Kang
Szymon Laczny
Szymon
Laczny
Jean-Paul Legoff
Jean-Paul
Legoff
Driecus Lesch
Driecus
Lesch
Tracy Richards
Tracy
Richards
Harpinder Randhawa
Harpinder
Randhawa
Tine Thach
Tine
Thach
Meinan Wang
Meinan
Wang
Mogens Hovmøller
Mogens
Hovmøller
David Hodson
David
Hodson
Diane Saunders
Diane
Saunders
Additional file 8 of MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens
Springer Nature
2019
Pathogen surveillance
Genomics
Point of care
Disease diagnostics
Wheat rust
Nanopore sequencing
2019-08-13 04:00:43
Figure
https://springernature.figshare.com/articles/figure/Additional_file_8_of_MARPLE_a_point-of-care_strain-level_disease_diagnostics_and_surveillance_tool_for_complex_fungal_pathogens/9565931
RNA-seq analysis of the 51 Ethiopian Pst isolates using the 242 genes defined herein shows they are genetically closely related. Phylogenetic analysis was carried out using the 51 Pst isolates collected in Ethiopia in the 2017/2018 growing season and the 301 global Pst isolates, using a maximum-likelihood model and 100 bootstraps. The 51 Ethiopian Pst isolates grouped in two closely related clades. One of the two clades also grouped closely with Pst isolates from genetic group 2, however, this was supported by a low bootstrap value that may be indicative of uncertainty in the grouping of these isolates (Additional file 12). Scale indicates the mean number of nucleotide substitutions per site. (EPS 1459 kb)