MOESM1 of Differential transcriptome analysis of the disease tolerant Madagascar–Malaysia crossbred black tiger shrimp, Penaeus monodon hepatopancreas in response to acute hepatopancreatic necrosis disease (AHPND) infection: inference on immune gene response and interaction Tze Soo Sridevi Devadas Mohamed Mohamed Din Subha Bhassu 10.6084/m9.figshare.9119147.v1 https://springernature.figshare.com/articles/journal_contribution/MOESM1_of_Differential_transcriptome_analysis_of_the_disease_tolerant_Madagascar_Malaysia_crossbred_black_tiger_shrimp_Penaeus_monodon_hepatopancreas_in_response_to_acute_hepatopancreatic_necrosis_disease_AHPND_infection_inference_on_immune/9119147 Additional file 1. Transcriptomic analysis (RNA-Seq) details for AHPND-infected P. monodon hepatopancreas samples under APm-CTL, APm-T3, APm-T6, and APm-T24. Table S1: Summary of sequencing reads after filtering. Table S2: Transcriptome de novo assembly Unigenes quality metrics. Figure S1: Distribution of Unigenes based on FPKM values. Figure S2: Distribution of FPKM and TPM values based on length of Unigenes. Table S3: Overview of functional annotation results. Figure S3: Species distribution of transcriptome Unigenes annotated to NR annotation. Figure S4: Functional distribution of Unigenes based on COG analysis. Figure S5: Functional distribution of Unigenes based on GO annotation. Figure S6: Functional distribution of Unigenes based on KEGG annotation. Figure S7: Functionally enriched KEGG pathways based on DEGs. Table S4. Primer sequences designed for qRT-PCR analysis. Figure S8: Relative log2 fold change of P. monodon hepatopancreas C-type lectin gene expression across post-AHPND infection time points. Table S5: One-Way Analysis of Variance (One-Way ANOVA) and post hoc Duncan test showing statistical significance of P. monodon post-AHPND infection C-type Lectin relative gene expressions obtained. Figure S9: Relative log2 fold change of P. monodon hepatopancreas IMD gene expression across post-AHPND infection time points. Table S6: One-Way Analysis of Variance (One-Way ANOVA) and post hoc Duncan test showing statistical significance of P. monodon post-AHPND infection IMD relative gene expressions obtained. Figure S10: Relative log2 fold change of P. monodon hepatopancreas ALF lectin gene expression across post-AHPND infection time points. Table S7: One-Way Analysis of Variance (One-Way ANOVA) and post hoc Duncan test showing statistical significance of P. monodon post-AHPND infection ALF relative gene expressions obtained. Figure S11: Relative log2 fold change of P. monodon hepatopancreas HMGB1 lectin gene expression across post-AHPND infection time points. Table S8: One-Way Analysis of Variance (One-Way ANOVA) and post hoc Duncan test showing statistical significance of P. monodon post-AHPND infection HMGB1 relative gene expressions obtained. 2019-07-27 03:59:57 Penaeus monodon Acute hepatopancreatic necrosis disease (AHPND) Transcriptome analysis Shrimp innate immune response PAMPs DAMPs