Additional file 4: of Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida)
Hong-Rui Zhang
Xian-Chun Zhang
Qiao-Ping Xiang
10.6084/m9.figshare.8261594.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_4_of_Directed_Repeats_Co-occur_with_Few_Short-Dispersed_Repeats_in_Plastid_Genome_of_a_Spikemoss_Selaginella_vardei_Selaginellaceae_Lycopodiopsida_/8261594
Figure S4. Reads coverages of putative subgenomes and alternative reads assemblies in S. vardei. a, b: Two alternative reads assemblies at LSC/DRa and SSC/DRb boundaries: the unmatched reads in black box in a is consistent with assembled sequence in black box in b, the unmatched reads in red box in b is consistent with assembled sequence in red box in a; c, d: Two alternative reads assemblies at DRa/SSC and DRb/LSC boundaries: the unmatched reads in black box in c is consistent with assembled sequence in black box in d, the unmatched reads in red box in d is consistent with assembled sequence in red box in c. e: the simplified structure for master chromosomes and subgenomes based on a, b, c, d in this figure. We define the arrow end as B, and the other end as A. End B of either LSC (a) or SSC (b) can be assembled with end B of DR. End A of either LSC (c) or SSC (d) can be assembled with end A of DR. (PDF 1549 kb)
2019-06-11 05:00:00
direct repeat
inversion
inverted repeat
plastome evolution
short dispersed repeats