Additional file 1: of Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations and multiple nonsynonymous rates
Katherine Dunn
Toby Kenney
Hong Gu
Joseph Bielawski
10.6084/m9.figshare.7587662.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Improved_inference_of_site-specific_positive_selection_under_a_generalized_parametric_codon_model_when_there_are_multinucleotide_mutations_and_multiple_nonsynonymous_rates/7587662
The GPP model uses a logarithm link function to link the non-zero off-diagonal elements of the 61âĂâ61 instantaneous rate matrix to a linear model. (PDF 688 kb)
2019-01-14 05:00:00
Codon model
Positive selection
Protein evolution
Multiple nucleotide mutations
Multiple nonsynonymous rates
M-series models
G-series models
Likelihood ratio test
False positives
Model misspecification
Codon frequencies