10.6084/m9.figshare.7587662.v1 Katherine Dunn Katherine Dunn Toby Kenney Toby Kenney Hong Gu Hong Gu Joseph Bielawski Joseph Bielawski Additional file 1: of Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations and multiple nonsynonymous rates Springer Nature 2019 Codon model Positive selection Protein evolution Multiple nucleotide mutations Multiple nonsynonymous rates M-series models G-series models Likelihood ratio test False positives Model misspecification Codon frequencies 2019-01-14 05:00:00 Journal contribution https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Improved_inference_of_site-specific_positive_selection_under_a_generalized_parametric_codon_model_when_there_are_multinucleotide_mutations_and_multiple_nonsynonymous_rates/7587662 The GPP model uses a logarithm link function to link the non-zero off-diagonal elements of the 61 × 61 instantaneous rate matrix to a linear model. (PDF 688 kb)