Additional file 4: of Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA
Kujin Tang
Jie Ren
Richard Cronn
David Erickson
Brook Milligan
Meaghan Parker-Forney
John Spouge
Fengzhu Sun
10.6084/m9.figshare.7446737.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_4_of_Alignment-free_genome_comparison_enables_accurate_geographic_sourcing_of_white_oak_DNA/7446737
Figure S5. The circular plots for independent samples sequenced using a) Illumina NGS of a California Valley Oak tree, b) a mixture of short- and long read from with both Illumina and PacBio sequencing of the Pendunculate Oak tree, and c) seven diverse tree samples using RAD-seq. The (A) d 2 S $$ {d}_2^S $$ dissimilarity and (B) Manhattan distance measures of each independent sample with the 92 reference samples were calculated and the two most similar reference samples are linked. (PDF 225 kb)
2018-12-10 05:00:00
Pendunculate Oak tree
PDF 225 kb
California Valley Oak tree
92 reference samples
oak DNA Figure S 5.
Manhattan distance measures
PacBio sequencing
Alignment-free genome comparison
Illumina NGS
tree samples
reference samples