%0 Journal Article %A Polouliakh, Natalia %A Horton, Paul %A Shibanai, Kazuhiro %A Takata, Kodai %A Ludwig, Vanessa %A Ghosh, Samik %A Kitano, Hiroaki %D 2018 %T Additional file 1: of Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis %U https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Sequence_homology_in_eukaryotes_SHOE_interactive_visual_tool_for_promoter_analysis/7145114 %R 10.6084/m9.figshare.7145114.v1 %2 https://springernature.figshare.com/ndownloader/files/13149464 %K Comparative genomics %K Transcription regulation %K Gene network %X Figure S1. Pareto front score optimization on SHOE. A) Illustration of the conflict between two scores (MA score and PSSM score) and the concept of dominance; B) Visualization of several groups of scores using Pentachlorophenol response dataset (PCP), PCP_raw (red) denotes random score zone, PCP_ma (purple) denotes zone where MA score is high, PCP_pssm (blue) is the zone where the PSSM score is high, and PCPtrimmedLog (green) is the zone where a trade-off between two scores is taken. C) Example of the analysis with 30 top Pareto fronts with each type of motif shown in different shape and color. (PDF 360 kb) %I figshare