Additional file 5: of Epigenetic modifications in KDM lysine demethylases associate with survival of early-stage NSCLC
Yongyue Wei
Junya Liang
Ruyang Zhang
Yichen Guo
Sipeng Shen
Li Su
Xihong Lin
Sebastian Moran
Ă
slaug Helland
Maria BjaanĂŚs
Anna Karlsson
Maria Planck
Manel Esteller
Thomas Fleischer
Johan Staaf
Yang Zhao
Feng Chen
David Christiani
10.6084/m9.figshare.6077576.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_5_of_Epigenetic_modifications_in_KDM_lysine_demethylases_associate_with_survival_of_early-stage_NSCLC/6077576
Figure S3. DNA methylation probes identified by flexible criterion in squamous cell carcinoma and their correlation with corresponding gene expression. Three more sites were identified in SCC samples under flexible criterion: cg06646494 in KDM2B, cg00121158 in KDM4C, and cg06615743 in KDM4B. The cg00121158 (A) and cg06615743 (B) showed a statistical correlation with the corresponding gene expression. DNA methylation level was categorized to six quantiles and box plot for gene expression was drawn for each quantile. Pearson correlation was used to estimate the correlation coefficient (r) and the P value, Gene expression was log2 transformed before analysis. (PDF 571 kb)
2018-04-02 05:00:00
KDM
Lysine demethylase
DNA methylation
Lung cancer
Survival