10.6084/m9.figshare.c.3917344_D1.v1
Sabine Oesterle
Sabine
Oesterle
Tania Roberts
Tania
Roberts
Lukas Widmer
Lukas
Widmer
Harun Mustafa
Harun
Mustafa
Sven Panke
Sven
Panke
Sonja Billerbeck
Sonja
Billerbeck
Additional file 10: Table S4. of Sequence-based prediction of permissive stretches for internal protein tagging and knockdown
Springer Nature
2017
Permissive site
Internal protein tagging
TEV protease
Protein knockdowns
Cell-free biotechnology
2017-10-30 05:00:00
Journal contribution
https://springernature.figshare.com/articles/journal_contribution/Additional_file_10_Table_S4_of_Sequence-based_prediction_of_permissive_stretches_for_internal_protein_tagging_and_knockdown/5553253
Structural features of predicted permissive stretches determined by structure prediction and crystal structures. Secondary structure (SS) and RSA were predicted from sequence using NetSurfP [45] and calculated from crystal structures using the DSSP algorithm [63]. A crystal structure for GpsA was not available. The RSA of a stretch is defined as the maximum RSA of its constituent sites. The correlations of RSA and SS between predictions and crystal structures at all residues were computed by distance correlation [65]. The crystal structure was not resolved in TpiA PSIV and AtpA PSI. See Methods for more precise definitions of these calculations. (DOCX 68 kb)