%0 Journal Article %A Poulsen, Thomas %A Frith, Martin %D 2017 %T Additional file 1 of Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads %U https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Variable-order_sequence_modeling_improves_bacterial_strain_discrimination_for_Ion_Torrent_DNA_reads/5103568 %R 10.6084/m9.figshare.c.3801394_D1.v1 %2 https://springernature.figshare.com/ndownloader/files/8661226 %K Sequence alignment %K Higher order %K HMM %K Ion Torrent %K Pathogen detection %X Supplementary information. This file contains the following sections: S1 - Details about seeding, alignment steps, and parameter selection. S2 - Contains details and graphs for additional testing and results described in the Results section of the main text. S3 - Version details for the different aligners. S4 - Parameters used for Last training and alignment, and also Last training results. S5 - Where to download and how to use Varhmm software, as well as training results from VarHMM. (PDF 318 kb) %I figshare