10.6084/m9.figshare.c.3750677_D1.v1
Tran Dung
Tran
Dung
Pham Duy
Pham
Duy
October Sessions
October
Sessions
Uma Sangumathi
Uma
Sangumathi
Voong Phat
Voong
Phat
Pham Tam
Pham
Tam
Nguyen To
Nguyen
To
Tran Phuc
Tran
Phuc
Tran Hong Chau
Tran
Hong Chau
Nguyen Chau
Nguyen
Chau
Ngoc Minh
Ngoc
Minh
Guy Thwaites
Guy
Thwaites
Maia Rabaa
Maia
Rabaa
Stephen Baker
Stephen
Baker
Additional file 1: Figure S1. of A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection
Springer Nature
2017
Rotavirus A
Genomics
Phylogenetics
Genome sequencing
Reassortment
Co-infection
Antibody capture
2017-04-24 05:00:00
Journal contribution
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Figure_S1_of_A_universal_genome_sequencing_method_for_rotavirus_A_from_human_fecal_samples_which_identifies_segment_reassortment_and_multi-genotype_mixed_infection/4905986
Phylogenetic incongruity confirms reassortment of G1P[8] VP7-VP4 segments and DS-1-like backbone segments in four Vietnamese G1P[8] rotaviruses. (A) Tanglegram showing correspondence across VP7 and VP4 segments of the G1P[8] and G2P[4] genotype. (B) Tanglegram showing phylogenetic incongruity for the VP7 and VP6 segments of the G1P[8] and G2P[4] genotype for four reassortant rotaviruses from Vietnam. (C) Phylogenetic incongruity in VP7 and VP1. (D) Phylogenetic incongruity in VP7 and VP2. (E) Phylogenetic incongruity in VP7 and VP3. (F) Phylogenetic incongruity in VP7 and NSP1. (G) Phylogenetic incongruity in VP7 and NSP2. (H) Phylogenetic incongruity in VP7 and NSP3. (I) Phylogenetic incongruity in VP7 and NSP4. (J) Phylogenetic incongruity in VP7 and NSP5. In all tanglegrams, sequences from nonreassortant Vietnamese rotaviruses are indicated by connection with black lines. Sequences from reassortant Vietnamese viruses are indicated by connection with red lines. Segments between which no reassortment is detected (i.e. VP7-VP4) are depicted with reassortant viruses connected by red dashed lines. Asterisks indicate âĽ85% bootstrap support at internal nodes of interest. (PDF 3252 kb)