10.6084/m9.figshare.c.3674716_D1.v1
Renata Martins
Renata
Martins
Jörns Fickel
Jörns
Fickel
Minh Le
Minh
Le
Thanh van Nguyen
Thanh
van Nguyen
Ha Nguyen
Ha
Nguyen
Robert Timmins
Robert
Timmins
Han Gan
Han
Gan
Jeffrine Rovie-Ryan
Jeffrine
Rovie-Ryan
Dorina Lenz
Dorina
Lenz
Daniel Förster
Daniel
Förster
Andreas Wilting
Andreas
Wilting
Additional file 1: of Phylogeography of red muntjacs reveals three distinct mitochondrial lineages
Springer Nature
2017
Phylogeography
Archival DNA
Muntjac
Southeast Asia
Species complex
2017-01-26 05:00:00
Journal contribution
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Phylogeography_of_red_muntjacs_reveals_three_distinct_mitochondrial_lineages/4587547
Table S1. Comparison of number of accepted red muntjac species and subspecies among three different recent publications. Number of recognized species range from 1 to 6 and number of recognized subspecies range from none to 10. Table S2. Complete dataset used for analyses, with information on origin, location and contact. Table S3. Long-range PCR primer sequences and annealing temperatures used for bait development. Table S4. Sequencing results from all samples used in this study, with indication of sequencing platform, percentage of reads on target, average base coverage depth and percentage of reference genome covered with at least 3x coverage. Table S5. Number of Variable sites (V) and Parsimony informative sites (Pi) per coding gene, throughout the full mitogenomes obtained. Figure S1. Best tree obtained with RAxML through Maximum Likelihood Analysis. Figure S2. Maximum Likelihood tree of the Cytochrome B gene, including five individuals from Western Ghats, supporting the clade differentiation of Sri Lanka – Western Ghats from all other red muntjac populations. (PDF 519 kb)