Bucci, Vanni Tzen, Belinda Li, Ning Simmons, Matt Tanoue, Takeshi Bogart, Elijah Deng, Luxue Yeliseyev, Vladimir Delaney, Mary Liu, Qing Olle, Bernat Stein, Richard Honda, Kenya Bry, Lynn Gerber, Georg Additional file 5: Figure S3. of MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses Experimental design for probiotic stability studies in gnotobiotic mice. Seven adult germ-free mice were gavaged with 13 Clostridia strains from the VE202 probiotic cocktail [24]. Five mice were maintained on a standard high-fiber diet for 5 weeks, after which mice were switched to a low-fiber diet for 2 weeks and then switched back to the high-fiber diet for another 2 weeks; an additional two mice were inoculated with the same strains but were not subjected to the low-fiber dietary perturbation. Fecal pellets were collected at days 1–21 (daily), 23, 25, 27, 29, 31, 33, 35–60 (daily), 62, 63, and 65 for the five mice receiving the low-fiber dietary perturbation and at days 1–21 (daily), 23, 25, 27, and 29 for the two mice not receiving the perturbation. (PDF 42 kb) low-fiber;VE;perturbation;MDSINE;13 Clostridia strains;adult germ-free mice;2  weeks;diet;microbiome time-series analyses;Microbial Dynamical Systems INference Engine;PDF 42 kb;probiotic stability studies 2016-06-03
    https://springernature.figshare.com/articles/journal_contribution/Additional_file_5_Figure_S3_of_MDSINE_Microbial_Dynamical_Systems_INference_Engine_for_microbiome_time-series_analyses/4456802
10.6084/m9.figshare.c.3640829_D8.v1