Additional file 1: Figure S1. of ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline Qian Qin Shenglin Mei Qiu Wu Hanfei Sun Lewyn Li Len Taing Sujun Chen Fugen Li Tao Liu Chongzhi Zang Han Xu Yiwen Chen Clifford Meyer Yong Zhang Myles Brown Henry Long X. Liu 10.6084/m9.figshare.c.3636644_D2.v1 https://springernature.figshare.com/articles/figure/Additional_file_1_Figure_S1_of_ChiLin_a_comprehensive_ChIP-seq_and_DNase-seq_quality_control_and_analysis_pipeline/4442183 Library complexity method exploration. a. PBC score comparison between ChiLin and ENCODE. b. Correlation between 5 and 30 M uniquely mapped reads across different library complexity metrics for ChIP-seq and DNase-seq. c. Linear regresssion F statistics between 5 and 30 M uniquely mapped reads library complexity metrics for ChIP-seq and DNase-seq. d. Three degrees of library complexity quality, each with 10 samples. e. PBC score distribution at different sequence depths through sampling down the uniquely mapped reads, line and point colors indicates different quality level as in d. (TIF 2123 kb) 2016-10-03 05:00:00 ChIP-seq DNase-seq Quality atlas Analysis pipeline