Additional file 1: Figure S1. of ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
Qian Qin
Shenglin Mei
Qiu Wu
Hanfei Sun
Lewyn Li
Len Taing
Sujun Chen
Fugen Li
Tao Liu
Chongzhi Zang
Han Xu
Yiwen Chen
Clifford Meyer
Yong Zhang
Myles Brown
Henry Long
X. Liu
10.6084/m9.figshare.c.3636644_D2.v1
https://springernature.figshare.com/articles/figure/Additional_file_1_Figure_S1_of_ChiLin_a_comprehensive_ChIP-seq_and_DNase-seq_quality_control_and_analysis_pipeline/4442183
Library complexity method exploration. a. PBC score comparison between ChiLin and ENCODE. b. Correlation between 5 and 30Â M uniquely mapped reads across different library complexity metrics for ChIP-seq and DNase-seq. c. Linear regresssion F statistics between 5 and 30Â M uniquely mapped reads library complexity metrics for ChIP-seq and DNase-seq. d. Three degrees of library complexity quality, each with 10 samples. e. PBC score distribution at different sequence depths through sampling down the uniquely mapped reads, line and point colors indicates different quality level as in d. (TIF 2123Â kb)
2016-10-03 05:00:00
ChIP-seq
DNase-seq
Quality atlas
Analysis pipeline