10.6084/m9.figshare.c.3636047_D3.v1
Enoch Antwi
Enoch
Antwi
Jurgen Haanstra
Jurgen
Haanstra
Gowthaman Ramasamy
Gowthaman
Ramasamy
Bryan Jensen
Bryan
Jensen
Dorothea Droll
Dorothea
Droll
Federico Rojas
Federico
Rojas
Igor Minia
Igor
Minia
Monica Terrao
Monica
Terrao
Clémentine Mercé
Clémentine
Mercé
Keith Matthews
Keith
Matthews
Peter Myler
Peter
Myler
Marilyn Parsons
Marilyn
Parsons
Christine Clayton
Christine
Clayton
Additional file 14: Table S2. of Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Springer Nature
2016
4 times
BS
BS-D
PC
UTR
mRNA
procyclic forms
XLSX 796 kb
ORF
bloodstream forms
PC-A
Trypanosoma brucei gene expression cascade
2016-04-26 05:00:00
Dataset
https://springernature.figshare.com/articles/dataset/Additional_file_14_Table_S2_of_Integrative_analysis_of_the_Trypanosoma_brucei_gene_expression_cascade_predicts_differential_regulation_of_mRNA_processing_and_unusual_control_of_ribosomal_protein_expression/4440308
Sheet 1: Results for coding regions present in both sheets 1 and 2 of Additional file 9: Table S1 are compared, using PC-A and BS-D for modelling. Column “BS ratio/PC ratio” is column M divided by column H and indicates possible developmental regulation of processing. Column O: “1. BS low”: mRNA amount is at least 4 times less than expected in bloodstream forms; “2. PC Low”: mRNA amount is at least 4 times less than expected in procyclic forms; 3. Both low: mRNA amount is at least 4 times less than expected in both forms; 4. Normal: remaining genes, except for “5. BS high”: mRNA amount is at least 4 times more than expected in bloodstream forms. Data for 5′-UTRs and upstream ORFs are from TritrypDB. Sheet 2: mRNAs that were at least 4 times less abundant than predicted in bloodstream forms, and more abundant than predicted procyclic forms. Sheet 3: mRNAs that were at least 4 times less abundant than predicted in both bloodstream and procyclic forms. Note that columns Q and R are not independent since each includes the mRNA abundance. Sheet 4: Statistical analyses. Sequence information was taken from from TritrypDB. (XLSX 796 kb)