Yu, Jinsheng Cliften, Paul Juehne, Twyla Sinnwell, Toni Sawyer, Chris Sharma, Mala Lutz, Andrew Tycksen, Eric Johnson, Mark Minton, Matthew Klotz, Elliott Schriefer, Andrew Yang, Wei Heinz, Michael Crosby, Seth Head, Richard Additional file 2: Figure S2. of Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology Overall average absolute fold-change comparisons across platforms with entire set and transcript pattern (TP) defined subset data, with a focus on the effect of Affymetrix “Signal Space Transformation” (SST) algorithm on the overall platform fold-change magnitude. The SST, in conjunction with the regular robust multiple-array average normalization method (SST-RMA, the dark blue bars), was able to improve the fold-change in the HTA2.0 arrays, and provided a 2-5x greater fold-change estimates overall, as compared to conventional data processing method (regular RMA, the light blue bars). (TIFF 491 kb) Transcript pattern;Fold-change;RNA-seq;Microarray;TaqMan assay 2015-09-18
    https://springernature.figshare.com/articles/figure/Additional_file_2_Figure_S2_of_Multi-platform_assessment_of_transcriptional_profiling_technologies_utilizing_a_precise_probe_mapping_methodology/4415147
10.6084/m9.figshare.c.3628175_D2.v1