%0 Generic %A Fortin, Jean-Philippe %A Hansen, Kasper %D 2015 %T Additional file 2 of Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data %U https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Reconstructing_A_B_compartments_as_revealed_by_Hi-C_using_long-range_correlations_in_epigenetic_data/4400729 %R 10.6084/m9.figshare.c.3623309_D2.v1 %2 https://springernature.figshare.com/ndownloader/files/7127114 %K Methylation %K Chromatin %K Epigenetics %K Chromosome configuration capture %K Single-cell %K Hi-C %K DNase sequencing %X TCGA A/B compartments. Estimated compartments for 12 TCGA cancers using 450 k methylation data, as a concatenated TXT file. There are six columns; the file is tab separated and has a header. Column 1 (tcga_code) is the TCGA short code for the cancer. Columns 2 (chr), 3 (start) and 4 (end) are the chromosomal coordinates of each region, in hg19 coordinates (1-based) and at 100-kb resolution. Column 5 (eigen) is the estimated first eigenvector. Column 6 (domain) is whether or not the region is estimated to be in open or closed chromatin. (TXT 13619 kb) %I figshare