Additional file 6: Figure S6. of The impact of sequence database choice on metaproteomic results in gut microbiota studies
Alessandro Tanca
Antonio Palomba
Cristina Fraumene
Daniela Pagnozzi
Valeria Manghina
Massimo Deligios
Thilo Muth
Erdmann Rapp
Lennart Martens
Maria Addis
Sergio Uzzau
10.6084/m9.figshare.c.3621314_D1.v1
https://springernature.figshare.com/articles/figure/Additional_file_6_Figure_S6_of_The_impact_of_sequence_database_choice_on_metaproteomic_results_in_gut_microbiota_studies/4394801
Cladograms illustrating human gut microbiota taxa detected with differential abundance when using different sequence databases. Spectral counting data obtained upon Sequest-HT/Percolator search (1Â % FDR) and MEGAN (left) or Unipept (right) lowest common ancestor (LCA) taxonomic classification were uploaded into LEfSe for differential analysis and cladogram construction. Taxa with higher abundance related to a given database are marked with the specific database color (dark blue, reads-based MG-DB; red, contigs-based MG-DB; turquoise, UniProt Bacteria). (TIF 3450 KB)
2016-09-27 05:00:00
Bioinformatics
Gut microbiota
Mass spectrometry
Metagenomics
Metaproteomics