Additional file 7: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication
Fantao Zhang
Tao Xu
Linyong Mao
Shuangyong Yan
Xiwen Chen
Zhenfeng Wu
Rui Chen
Xiangdong Luo
Jiankun Xie
Shan Gao
10.6084/m9.figshare.c.3618986_D7.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_7_of_Genome-wide_analysis_of_Dongxiang_wild_rice_Oryza_rufipogon_Griff_to_investigate_lost_acquired_genes_during_rice_domestication/4387724
Table S1. Eighteen of 1591 Nipponbare-acquired genes. Table S2. Thirteen Nipponbare-acquired genes involving the photosynthesis pathway. Table S3. Eleven Nipponbare-acquired genes involving the oxidative phosphorylation pathway. Table S4. Eighteen DXWR-lost transcripts during domestication. The last section recorded all the parameters used in bwa, SVDetect and SVFilter. (DOC 126Â kb)
2016-04-26 05:00:00
Dongxiang wild rice
Whole genome sequencing
Transcriptome
Comparative genomics analysis
Structural variation