Additional file 7: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication Fantao Zhang Tao Xu Linyong Mao Shuangyong Yan Xiwen Chen Zhenfeng Wu Rui Chen Xiangdong Luo Jiankun Xie Shan Gao 10.6084/m9.figshare.c.3618986_D7.v1 https://springernature.figshare.com/articles/journal_contribution/Additional_file_7_of_Genome-wide_analysis_of_Dongxiang_wild_rice_Oryza_rufipogon_Griff_to_investigate_lost_acquired_genes_during_rice_domestication/4387724 Table S1. Eighteen of 1591 Nipponbare-acquired genes. Table S2. Thirteen Nipponbare-acquired genes involving the photosynthesis pathway. Table S3. Eleven Nipponbare-acquired genes involving the oxidative phosphorylation pathway. Table S4. Eighteen DXWR-lost transcripts during domestication. The last section recorded all the parameters used in bwa, SVDetect and SVFilter. (DOC 126 kb) 2016-04-26 05:00:00 Dongxiang wild rice Whole genome sequencing Transcriptome Comparative genomics analysis Structural variation