10.6084/m9.figshare.c.3617384_D1.v1 Emmanuel Sapin Emmanuel Sapin Daniel Carr Daniel Carr Kenneth De Jong Kenneth De Jong Amarda Shehu Amarda Shehu Additional file 3 of Computing energy landscape maps and structural excursions of proteins Springer Nature 2016 Protein equilibrium dynamics Multi-state protein Multi-basin energy landscape Energy landscape map Sample-based representation Evolutionary algorithm Structural excursion Mechanical work Nearest-neighbor graph Low-cost paths 2016-08-18 05:00:00 Journal contribution https://springernature.figshare.com/articles/journal_contribution/Additional_file_3_of_Computing_energy_landscape_maps_and_structural_excursions_of_proteins/4382420 Visualization in 2D of map and paths computed for H-Ras G12D. The computed map for the H-Ras G12D variant is projected onto 2D and projections are color-coded by Rosetta score12 energy values. Low-cost paths (costs in REUs are listed) modeling the On →Off structural excursion are also drawn. The projections of experimentally-known structures on the top two PCs are related by showing whether the structures are captured in the wet laboratory for the WT or variants. (PDF 1823 kb)