10.6084/m9.figshare.c.3611126_D3.v1
Christelle Robert
Christelle
Robert
Ronan Kapetanovic
Ronan
Kapetanovic
Dario Beraldi
Dario
Beraldi
Mick Watson
Mick
Watson
Alan Archibald
Alan
Archibald
David Hume
David
Hume
Additional file 9: Table S5. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome
Springer Nature
2015
CAGE
FANTOM5
Promoters
Conservation
Pig
Macrophages
RNA-Seq
2015-11-18 05:00:00
Dataset
https://springernature.figshare.com/articles/dataset/Additional_file_9_Table_S5_of_Identification_and_annotation_of_conserved_promoters_and_macrophage-expressed_genes_in_the_pig_genome/4362617
Assembled transcripts mapping statistics to the NCBI nucleotide database based on the originally unmapped (to Sscrofa10.2) RNA-Seq fragments. RNA-Seq unmapped fragments from four macrophage libraries were pooled, assembled as transcripts using SOAPdenovo-Trans-31kmer and aligned to the NCBI nucleotide database (NT). Statistics show the number of transcripts assembled, mapped to NT, and expressed at FPKM>0 or FPKM>10 with pig or human annotation present in at least one hit of the top five hits to NT. (XLSX 26 kb)