Additional file 4: of Understanding pneumococcal serotype 1 biology through population genomic analysis
Chrispin Chaguza
Jennifer Cornick
Simon Harris
Cheryl Andam
Laura Bricio-Moreno
Marie Yang
Feyruz Yalcin
Sani Ousmane
Shanil Govindpersad
Madikay Senghore
Chinelo Ebruke
Mignon Du Plessis
Anmol Kiran
Gerd Pluschke
Betuel Sigauque
Lesley McGee
Keith Klugman
Paul Turner
Jukka Corander
Julian Parkhill
Jean-Marc Collard
Martin Antonio
Anne von Gottberg
Robert Heyderman
Neil French
Aras Kadioglu
William Hanage
Dean Everett
Stephen Bentley
10.6084/m9.figshare.c.3596405_D7.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_4_of_Understanding_pneumococcal_serotype_1_biology_through_population_genomic_analysis/4318637
Recombination events identified in the South African clade (SC1-SA). (a) Maximum likelihood phylogeny showing genetic relationship of the isolates in the SC. Color strips labeled (b) and (c) shows country and continent of origin of the isolates respectively. (d) Annotations in the reference serotype 1 genome. (e) Horizontal tracks from the phylogenetic tips represent each genome. The coloured blocks shows locations of the recombination events in the chromosome. Red blocks show shared recombination events identified in at least two isolate while the blue blocks show strain specific (unique) recombination events. (PDF 641Â kb)
2016-11-08 05:00:00
Pneumococcal serotype 1
ST217
Phylogeography
Evolution
Antibiotic resistance