MOESM1 of Impact of a single round of mass drug administration with azithromycin on active trachoma and ocular Chlamydia trachomatis prevalence and circulating strains in The Gambia and Senegal
Emma Harding-Esch
Martin Holland
Jean-François SchÊmann
Ansumana Sillah
Boubacar Sarr
Linus Christerson
Harry Pickering
Sandra Molina-Gonzalez
Isatou Sarr
Aura Andreasen
David Jeffries
Chris Grundy
David Mabey
Bjorn Herrmann
Robin Bailey
10.6084/m9.figshare.10026986.v1
https://springernature.figshare.com/articles/figure/MOESM1_of_Impact_of_a_single_round_of_mass_drug_administration_with_azithromycin_on_active_trachoma_and_ocular_Chlamydia_trachomatis_prevalence_and_circulating_strains_in_The_Gambia_and_Senegal/10026986
Additional file 1: Figure S1. Maximum likelihood reconstruction of whole genome and MLST phylogeny of ocular C. trachomatis sequences from the Bijagos Islands, Guinea-Bissau. MLST sequences were concatenated to create a complete MLST sequence per individual. Multiple MLST and genome alignments were generated using progressiveMauve. Phylogenies were computed using RaxML [5] and visualised in R. MLST and WGS phylogenies were compared using R package dendextend [6]. Isolates which were separated by < 90% of bootstrap replicates, using MLST and WGS respectively, are highlighted in the same colour. The scale-bar indicates evolutionary distance.
2019-10-23 08:23:52
Active trachoma
Chlamydia trachomatis
Ocular
Mass drug administration
Azithromycin
Prevalence
Whole-genome sequence
Organism load
ompA
Multi locus sequence typing