MOESM5 of SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines
Abraham Gihawi
Ghanasyam Rallapalli
Rachel Hurst
Colin Cooper
Richard Leggett
Daniel Brewer
10.6084/m9.figshare.10022429.v1
https://springernature.figshare.com/articles/figure/MOESM5_of_SEPATH_benchmarking_the_search_for_pathogens_in_human_tissue_whole_genome_sequence_data_leads_to_template_pipelines/10022429
Additional file 5 Violin plot shows genus level performance with increasing minimum contig coverage filter but not to a large degree (Fig_S4.png). Tool used was Kraken on MetaSPAdes contigs.
2019-10-22 19:07:25
Metagenomics
Pipeline
Taxonomy
Classification
SEPATH
Cancer
Pathogens
Bioinformatics
Bacteria
Viral